diff --git a/.github/workflows/playground_test.yml b/.github/workflows/playground_test.yml index 6a45c92..b797206 100644 --- a/.github/workflows/playground_test.yml +++ b/.github/workflows/playground_test.yml @@ -56,6 +56,7 @@ jobs: pip install pydisseqt pip install ismrmrd pip install MRzeroCore --no-deps + pip install bifti pip install torchkbnufft PyWavelets tqdm scikit-image wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null pip install jupyter nbconvert diff --git a/documentation/playground_mr0/Pulseq_zero_TSE_FAopt_SARtask.ipynb b/documentation/playground_mr0/Pulseq_zero_TSE_FAopt_SARtask.ipynb index f7fa738..5064ea1 100644 --- a/documentation/playground_mr0/Pulseq_zero_TSE_FAopt_SARtask.ipynb +++ b/documentation/playground_mr0/Pulseq_zero_TSE_FAopt_SARtask.ipynb @@ -80,6 +80,7 @@ "!pip install pulseqzero==0.2.1\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps &> /dev/null\n", + "!pip install bifti --no-deps &> /dev/null\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null\n" diff --git a/documentation/playground_mr0/mr0_DREAM_STE_seq.ipynb b/documentation/playground_mr0/mr0_DREAM_STE_seq.ipynb index ff8e86d..da3537a 100644 --- a/documentation/playground_mr0/mr0_DREAM_STE_seq.ipynb +++ b/documentation/playground_mr0/mr0_DREAM_STE_seq.ipynb @@ -29,6 +29,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_DREAM_STID_seq.ipynb b/documentation/playground_mr0/mr0_DREAM_STID_seq.ipynb index 1e43eb1..b5a5d09 100644 --- a/documentation/playground_mr0/mr0_DREAM_STID_seq.ipynb +++ b/documentation/playground_mr0/mr0_DREAM_STID_seq.ipynb @@ -53,6 +53,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_DWI_SE_EPI.ipynb b/documentation/playground_mr0/mr0_DWI_SE_EPI.ipynb index 683e8a8..7ae6342 100644 --- a/documentation/playground_mr0/mr0_DWI_SE_EPI.ipynb +++ b/documentation/playground_mr0/mr0_DWI_SE_EPI.ipynb @@ -62,6 +62,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/subject05.npz &> /dev/null" diff --git a/documentation/playground_mr0/mr0_EPI_2D_seq.ipynb b/documentation/playground_mr0/mr0_EPI_2D_seq.ipynb index 44b7073..536df1d 100644 --- a/documentation/playground_mr0/mr0_EPI_2D_seq.ipynb +++ b/documentation/playground_mr0/mr0_EPI_2D_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_FID_seq.ipynb b/documentation/playground_mr0/mr0_FID_seq.ipynb index 1f176d6..5fa1262 100644 --- a/documentation/playground_mr0/mr0_FID_seq.ipynb +++ b/documentation/playground_mr0/mr0_FID_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_FLASH_2D_seq.ipynb b/documentation/playground_mr0/mr0_FLASH_2D_seq.ipynb index a37c790..31150f1 100644 --- a/documentation/playground_mr0/mr0_FLASH_2D_seq.ipynb +++ b/documentation/playground_mr0/mr0_FLASH_2D_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_GRE_to_FLASH.ipynb b/documentation/playground_mr0/mr0_GRE_to_FLASH.ipynb index 53df4ec..7752a2e 100644 --- a/documentation/playground_mr0/mr0_GRE_to_FLASH.ipynb +++ b/documentation/playground_mr0/mr0_GRE_to_FLASH.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt" ] }, diff --git a/documentation/playground_mr0/mr0_RARE_2D_seq.ipynb b/documentation/playground_mr0/mr0_RARE_2D_seq.ipynb index 7dc1ec7..7328671 100644 --- a/documentation/playground_mr0/mr0_RARE_2D_seq.ipynb +++ b/documentation/playground_mr0/mr0_RARE_2D_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_SE_CPMG_seq.ipynb b/documentation/playground_mr0/mr0_SE_CPMG_seq.ipynb index 6f41977..dca23d7 100644 --- a/documentation/playground_mr0/mr0_SE_CPMG_seq.ipynb +++ b/documentation/playground_mr0/mr0_SE_CPMG_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_STE_3pulses_5echoes_seq.ipynb b/documentation/playground_mr0/mr0_STE_3pulses_5echoes_seq.ipynb index 85af1d1..6b7cd85 100644 --- a/documentation/playground_mr0/mr0_STE_3pulses_5echoes_seq.ipynb +++ b/documentation/playground_mr0/mr0_STE_3pulses_5echoes_seq.ipynb @@ -44,6 +44,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_TSE_2D_multi_shot_seq.ipynb b/documentation/playground_mr0/mr0_TSE_2D_multi_shot_seq.ipynb index 58867dd..1c8ab7d 100644 --- a/documentation/playground_mr0/mr0_TSE_2D_multi_shot_seq.ipynb +++ b/documentation/playground_mr0/mr0_TSE_2D_multi_shot_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/mr0_bSSFP_2D_seq.ipynb b/documentation/playground_mr0/mr0_bSSFP_2D_seq.ipynb index 8fa18ff..26c4bee 100644 --- a/documentation/playground_mr0/mr0_bSSFP_2D_seq.ipynb +++ b/documentation/playground_mr0/mr0_bSSFP_2D_seq.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null\n", diff --git a/documentation/playground_mr0/mr0_diffusion_prep_STEAM_2D_seq.ipynb b/documentation/playground_mr0/mr0_diffusion_prep_STEAM_2D_seq.ipynb index 70383dd..e20820b 100644 --- a/documentation/playground_mr0/mr0_diffusion_prep_STEAM_2D_seq.ipynb +++ b/documentation/playground_mr0/mr0_diffusion_prep_STEAM_2D_seq.ipynb @@ -49,6 +49,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/subject05.npz &> /dev/null" ] diff --git a/documentation/playground_mr0/mr0_time_vs_acc_bspBSSFP.ipynb b/documentation/playground_mr0/mr0_time_vs_acc_bspBSSFP.ipynb index 0dede15..00bd9fc 100644 --- a/documentation/playground_mr0/mr0_time_vs_acc_bspBSSFP.ipynb +++ b/documentation/playground_mr0/mr0_time_vs_acc_bspBSSFP.ipynb @@ -65,6 +65,7 @@ "!pip install torchkbnufft --no-deps\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null\n", diff --git a/documentation/playground_mr0/mr0_upload_seq.ipynb b/documentation/playground_mr0/mr0_upload_seq.ipynb index 944fb99..e78ea13 100644 --- a/documentation/playground_mr0/mr0_upload_seq.ipynb +++ b/documentation/playground_mr0/mr0_upload_seq.ipynb @@ -18,6 +18,7 @@ "\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps &> /dev/null\n", + "!pip install bifti --no-deps &> /dev/null\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null" diff --git a/documentation/playground_mr0/pulseq_zero_DESC_demo.ipynb b/documentation/playground_mr0/pulseq_zero_DESC_demo.ipynb index 7d1d458..8990b5d 100644 --- a/documentation/playground_mr0/pulseq_zero_DESC_demo.ipynb +++ b/documentation/playground_mr0/pulseq_zero_DESC_demo.ipynb @@ -25,6 +25,7 @@ "!pip install pulseqzero\n", "!pip install ismrmrd\n", "!pip install MRzeroCore --no-deps &> /dev/null\n", + "!pip install bifti --no-deps &> /dev/null\n", "!pip install pydisseqt" ] }, diff --git a/documentation/playground_mr0/unsorted/mr0_EPI_2D_with_ORC_seq.ipynb b/documentation/playground_mr0/unsorted/mr0_EPI_2D_with_ORC_seq.ipynb index 9cfeceb..100e7b3 100644 --- a/documentation/playground_mr0/unsorted/mr0_EPI_2D_with_ORC_seq.ipynb +++ b/documentation/playground_mr0/unsorted/mr0_EPI_2D_with_ORC_seq.ipynb @@ -52,6 +52,7 @@ "!pip install pypulseq &> /dev/null\n", "!pip install torchkbnufft --no-deps\n", "!pip install MRzeroCore --no-deps\n", + "!pip install bifti --no-deps\n", "!pip install pydisseqt\n", "\n", "!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"