Docs @ 00aa603

Author: MFC Action

documentation/architecture.html

@@ -403,7 +403,7 @@ <h1 class="doxsection"><a class="anchor" id="autotoc_md13"></a>
 <li><b>Add the module to <span class="tt">docs/module_categories.json</span></b> so it appears in this page</li>
 </ol>
 <p>Follow the pattern of existing modules like <span class="tt">m_body_forces</span> (simple) or <span class="tt">m_viscous</span> (more involved) as a template.</p>
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documentation/case_constraints.html

@@ -1434,7 +1434,7 @@ <h2 class="doxsection"><a class="anchor" id="physics-warnings"></a>
 </table>
 <hr  />
 <p>💡 <b>Tip:</b> If you encounter a validation error, check the relevant section above or review <a href="https://github.com/MFlowCode/MFC/blob/master/toolchain/mfc/case_validator.py"><span class="tt">case_validator.py</span></a> for complete validation logic.</p>
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documentation/cli-reference.html

@@ -994,7 +994,7 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md80"></a>
 <h3 class="doxsection"><a class="anchor" id="autotoc_md81"></a>
 Debug Logging (<span class="tt">-d, --debug-log</span>)</h3>
 <p>Enables debug logging for the Python toolchain (mfc.sh internals). This is for troubleshooting the build system, not the MFC simulation code.</p>
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documentation/examples.html

@@ -388,7 +388,7 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md276"></a>
 Final Condition</h3>
 <p>This figure shows the isosurface with zero q-criterion.</p>
 <p><img src="result-3D_TaylorGreenVortex-example.png" alt="" height="400" class="inline"/></p>
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documentation/parameters.html

@@ -1575,7 +1575,7 @@ <h2 class="doxsection"><a class="anchor" id="autotoc_md393"></a>
 <div class="line"> </div>
 <div class="line"># Filter by type</div>
 <div class="line">./mfc.sh params -t real weno</div>
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documentation/physics_constraints.html

@@ -624,7 +624,7 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md443"></a>
 <li>FFT WRT incompatible with cylindrical coordinates</li>
 <li>FFT WRT requires global dimensions divisible by 2</li>
 </ul>
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documentation/visualization.html

@@ -313,7 +313,7 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md548"></a>
 <h2 class="doxsection"><a class="anchor" id="autotoc_md550"></a>
 Visualizing with ParaView</h2>
 <p>ParaView is an open-source interactive parallel visualization and graphical analysis tool for viewing scientific data. Post-processed data in Silo-HDF5 format (<span class="tt">format=1</span>) can be opened directly in ParaView. Paraview 5.11.0 has been confirmed to work with the MFC databases for some parallel environments. Nevertheless, the installation and configuration of Paraview can be environment-dependent and are left to the user.</p>
-<p>The user can launch Paraview and open the index files under <span class="tt">/silo_hdf5/root</span>. Once the database is loaded, flow field variables contained in the database can be added to the render view. Further information on Paraview can be found in its <a href="https://docs.paraview.org/en/latest/">documentation</a>. The figure below shows the iso-contour of the liquid void fraction (<span class="tt">alpha1</span>) in the database generated by the example case <span class="tt">3D_sphbubcollapse</span>.</p>
+<p>The user can launch Paraview and open the series file <span class="tt">/silo_hdf5/collection.silo.series</span>. Once the database is loaded, flow field variables contained in the database can be added to the render view. Further information on Paraview can be found in its <a href="https://docs.paraview.org/en/latest/">documentation</a>. The figure below shows the iso-contour of the liquid void fraction (<span class="tt">alpha1</span>) in the database generated by the example case <span class="tt">3D_sphbubcollapse</span>.</p>
 <p><img src="../res/paraview.png" alt="" class="inline"/></p>
 <h3 class="doxsection"><a class="anchor" id="autotoc_md551"></a>
 Visualizing data in cylindrical coordinates</h3>

pre_process/m__global__parameters_8fpp_8f90_source.html

@@ -458,15 +458,15 @@
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 <div class="line"><a id="l00322" name="l00322"></a><span class="lineno">  322</span><span class="preprocessor"># 279 &quot;/home/runner/work/MFC/MFC/src/pre_process/m_global_parameters.fpp&quot;</span></div>
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-<div class="line"><a id="l00324" name="l00324"></a><span class="lineno">  324</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a7a7bb7c9caddde4f86bd27169b0f150d">bc_y</a>%isothermal_out = .false.</div>
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-<div class="line"><a id="l00326" name="l00326"></a><span class="lineno">  326</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a7a7bb7c9caddde4f86bd27169b0f150d">bc_y</a>%Twall_out = dflt_real</div>
+<div class="line"><a id="l00323" name="l00323"></a><span class="lineno">  323</span><span class="preprocessor"></span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%isothermal_in = .false.</div>
+<div class="line"><a id="l00324" name="l00324"></a><span class="lineno">  324</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%isothermal_out = .false.</div>
+<div class="line"><a id="l00325" name="l00325"></a><span class="lineno">  325</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%Twall_in = dflt_real</div>
+<div class="line"><a id="l00326" name="l00326"></a><span class="lineno">  326</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%Twall_out = dflt_real</div>
 <div class="line"><a id="l00327" name="l00327"></a><span class="lineno">  327</span><span class="preprocessor"># 279 &quot;/home/runner/work/MFC/MFC/src/pre_process/m_global_parameters.fpp&quot;</span></div>
-<div class="line"><a id="l00328" name="l00328"></a><span class="lineno">  328</span><span class="preprocessor"></span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%isothermal_in = .false.</div>
-<div class="line"><a id="l00329" name="l00329"></a><span class="lineno">  329</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%isothermal_out = .false.</div>
-<div class="line"><a id="l00330" name="l00330"></a><span class="lineno">  330</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%Twall_in = dflt_real</div>
-<div class="line"><a id="l00331" name="l00331"></a><span class="lineno">  331</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a2d3a5d211f996a1fff3238a8b7fe5fe7">bc_z</a>%Twall_out = dflt_real</div>
+<div class="line"><a id="l00328" name="l00328"></a><span class="lineno">  328</span><span class="preprocessor"></span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a7a7bb7c9caddde4f86bd27169b0f150d">bc_y</a>%isothermal_in = .false.</div>
+<div class="line"><a id="l00329" name="l00329"></a><span class="lineno">  329</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a7a7bb7c9caddde4f86bd27169b0f150d">bc_y</a>%isothermal_out = .false.</div>
+<div class="line"><a id="l00330" name="l00330"></a><span class="lineno">  330</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a7a7bb7c9caddde4f86bd27169b0f150d">bc_y</a>%Twall_in = dflt_real</div>
+<div class="line"><a id="l00331" name="l00331"></a><span class="lineno">  331</span>            <a class="code hl_variable" href="namespacem__global__parameters.html#a7a7bb7c9caddde4f86bd27169b0f150d">bc_y</a>%Twall_out = dflt_real</div>
 <div class="line"><a id="l00332" name="l00332"></a><span class="lineno">  332</span><span class="preprocessor"># 284 &quot;/home/runner/work/MFC/MFC/src/pre_process/m_global_parameters.fpp&quot;</span></div>
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 <div class="line"><a id="l00334" name="l00334"></a><span class="lineno">  334</span>        <a class="code hl_variable" href="namespacem__global__parameters.html#ac127ac2a9036e1cdb7e6c41159cacdfb">parallel_io</a> = .false.</div>