Small, project-specific workflow scripts — versioned here until they’re general enough for their own repo.
| Path | Purpose |
|---|---|
bg_viz_pipeline/ |
Brain registration, segmentation and visualization workflow scripts (SLURM, brainreg, brainrender). |
rat_template_building/ |
Build 25 um rat brain template with modelbuild.sh (ANTs, QBatch, SLURM). |
hpc_tools/ |
Small HPC helper scripts. |
figures/ |
Publication figures to link in HackMD and other external tools. |