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move to jekyll
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‎.gitignore‎

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# Jekyll
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_site/
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.sass-cache/
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.jekyll-cache/
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.jekyll-metadata
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# Ruby
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.bundle/
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vendor/
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# OS
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.DS_Store
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Thumbs.db
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# IDE
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.vscode/
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.idea/
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*.swp
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*.swo
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# Logs
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*.log

‎Gemfile‎

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source "https://rubygems.org"
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gem "jekyll", "~> 4.3.0"
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gem "minima", "~> 2.5"
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group :jekyll_plugins do
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gem "jekyll-feed", "~> 0.12"
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gem "jekyll-sitemap"
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end
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# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
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# and associated library.
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platforms :mingw, :x64_mingw, :mswin, :jruby do
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gem "tzinfo", ">= 1", "< 3"
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gem "tzinfo-data"
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end
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# Performance-booster for watching directories on Windows
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gem "wdm", "~> 0.1.1", :platforms => [:mingw, :x64_mingw, :mswin]
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# Lock `http_parser.rb` gem to `v0.6.x` on JRuby builds since newer versions of the gem
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# do not have a Java counterpart.
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gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby]

‎Gemfile.lock‎

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GEM
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remote: https://rubygems.org/
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specs:
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addressable (2.8.7)
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public_suffix (>= 2.0.2, < 7.0)
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bigdecimal (3.2.3)
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colorator (1.1.0)
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concurrent-ruby (1.3.5)
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em-websocket (0.5.3)
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eventmachine (>= 0.12.9)
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http_parser.rb (~> 0)
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eventmachine (1.2.7)
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ffi (1.17.2)
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ffi (1.17.2-aarch64-linux-gnu)
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ffi (1.17.2-aarch64-linux-musl)
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ffi (1.17.2-arm-linux-gnu)
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ffi (1.17.2-arm-linux-musl)
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ffi (1.17.2-arm64-darwin)
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ffi (1.17.2-x86-linux-gnu)
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ffi (1.17.2-x86-linux-musl)
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ffi (1.17.2-x86_64-darwin)
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ffi (1.17.2-x86_64-linux-gnu)
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ffi (1.17.2-x86_64-linux-musl)
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forwardable-extended (2.6.0)
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google-protobuf (4.32.1)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-aarch64-linux-gnu)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-aarch64-linux-musl)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-arm64-darwin)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-x86-linux-gnu)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-x86-linux-musl)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-x86_64-darwin)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-x86_64-linux-gnu)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.32.1-x86_64-linux-musl)
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bigdecimal
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rake (>= 13)
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http_parser.rb (0.8.0)
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i18n (1.14.7)
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concurrent-ruby (~> 1.0)
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jekyll (4.3.4)
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addressable (~> 2.4)
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colorator (~> 1.0)
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em-websocket (~> 0.5)
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i18n (~> 1.0)
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jekyll-sass-converter (>= 2.0, < 4.0)
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jekyll-watch (~> 2.0)
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kramdown (~> 2.3, >= 2.3.1)
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kramdown-parser-gfm (~> 1.0)
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liquid (~> 4.0)
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mercenary (>= 0.3.6, < 0.5)
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pathutil (~> 0.9)
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rouge (>= 3.0, < 5.0)
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safe_yaml (~> 1.0)
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terminal-table (>= 1.8, < 4.0)
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webrick (~> 1.7)
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jekyll-feed (0.17.0)
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jekyll (>= 3.7, < 5.0)
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jekyll-sass-converter (3.1.0)
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sass-embedded (~> 1.75)
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jekyll-seo-tag (2.8.0)
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jekyll (>= 3.8, < 5.0)
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jekyll-sitemap (1.4.0)
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jekyll (>= 3.7, < 5.0)
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jekyll-watch (2.2.1)
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listen (~> 3.0)
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kramdown (2.5.1)
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rexml (>= 3.3.9)
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kramdown-parser-gfm (1.1.0)
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kramdown (~> 2.0)
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liquid (4.0.4)
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listen (3.9.0)
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rb-fsevent (~> 0.10, >= 0.10.3)
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rb-inotify (~> 0.9, >= 0.9.10)
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mercenary (0.4.0)
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minima (2.5.2)
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jekyll (>= 3.5, < 5.0)
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jekyll-feed (~> 0.9)
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jekyll-seo-tag (~> 2.1)
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pathutil (0.16.2)
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forwardable-extended (~> 2.6)
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public_suffix (6.0.2)
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rake (13.3.0)
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rb-fsevent (0.11.2)
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rb-inotify (0.11.1)
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ffi (~> 1.0)
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rexml (3.4.4)
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rouge (4.6.1)
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safe_yaml (1.0.5)
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sass-embedded (1.93.2)
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google-protobuf (~> 4.31)
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rake (>= 13)
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sass-embedded (1.93.2-aarch64-linux-android)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-aarch64-linux-gnu)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-aarch64-linux-musl)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-arm-linux-androideabi)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-arm-linux-gnueabihf)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-arm-linux-musleabihf)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-arm64-darwin)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-riscv64-linux-android)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-riscv64-linux-gnu)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-riscv64-linux-musl)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-x86_64-darwin)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-x86_64-linux-android)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-x86_64-linux-gnu)
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google-protobuf (~> 4.31)
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sass-embedded (1.93.2-x86_64-linux-musl)
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google-protobuf (~> 4.31)
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terminal-table (3.0.2)
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unicode-display_width (>= 1.1.1, < 3)
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unicode-display_width (2.6.0)
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webrick (1.9.1)
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PLATFORMS
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aarch64-linux-android
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aarch64-linux-gnu
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aarch64-linux-musl
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arm-linux-androideabi
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arm-linux-gnu
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arm-linux-gnueabihf
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arm-linux-musl
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arm-linux-musleabihf
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arm64-darwin
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riscv64-linux-android
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riscv64-linux-gnu
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riscv64-linux-musl
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ruby
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x86-linux-gnu
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x86-linux-musl
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x86_64-darwin
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x86_64-linux-android
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x86_64-linux-gnu
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x86_64-linux-musl
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DEPENDENCIES
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http_parser.rb (~> 0.6.0)
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jekyll (~> 4.3.0)
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jekyll-feed (~> 0.12)
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jekyll-sitemap
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minima (~> 2.5)
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tzinfo (>= 1, < 3)
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tzinfo-data
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wdm (~> 0.1.1)
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BUNDLED WITH
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2.7.2

‎README.md‎

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# LIM Lab – Organization Site
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This repository publishes the organization-level GitHub Pages site at `https://<org>.github.io/`.
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# LIM Lab Website
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This is the official website for the Learning, Inference & Memory (LIM) Lab, led by Dr. Athena Akrami at the Sainsbury Wellcome Centre, UCL, London.
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## 🚀 Built with Jekyll
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This website is built using [Jekyll](https://jekyllrb.com/), a static site generator that's natively supported by GitHub Pages. This provides:
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- **Template System**: One layout file controls all pages
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- **Data-Driven Content**: People and publications managed in YAML files
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- **Automatic Builds**: GitHub Pages builds automatically on push
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- **Easy Maintenance**: Add new content without touching HTML
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## 📁 Site Structure
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```
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├── _config.yml # Site configuration
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├── _layouts/
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│ └── default.html # Main layout template
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├── _includes/
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│ ├── header.html # Header partial
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│ └── footer.html # Footer partial
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├── _data/
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│ ├── people.yml # Lab members data
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│ └── publications.yml # Publications data
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├── index.md # Home page
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├── research/
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│ └── index.md # Research page
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├── people/
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│ └── index.md # People page
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├── publications/
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│ └── index.md # Publications page
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├── labnews/
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│ └── index.md # Lab news page
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├── join/
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│ └── index.md # Join page
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└── assets/
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├── css/
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│ └── style.css # All styling
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└── img/ # Images and photos
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```
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## 🛠️ Local Development
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### Prerequisites
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- Ruby 2.7 or higher
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- Bundler gem
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### Setup
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```bash
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# Install dependencies
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bundle install
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# Build the site
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bundle exec jekyll build
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# Serve locally
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bundle exec jekyll serve
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```
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The site will be available at `http://localhost:4000`
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## 📝 Adding Content
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### Adding Lab Members
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Edit `_data/people.yml` and add new members to the appropriate section:
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```yaml
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research_fellows:
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- name: "New Person"
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title: "Research Fellow"
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photo: "photo.jpg" # or null for no photo
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description: "Research description..."
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```
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### Adding Publications
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Edit `_data/publications.yml` and add new publications:
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```yaml
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published:
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- authors: "Author Names"
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title: "Paper Title"
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journal: "Journal Name"
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year: 2024
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status: "In press" # optional
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note: "Additional note" # optional
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```
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### Adding News
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Edit `labnews/index.md` and add new news items in the Recent News section.
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## 🎨 Making Design Changes
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### Global Changes
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- **Header/Footer**: Edit `_includes/header.html` or `_includes/footer.html`
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- **Layout**: Edit `_layouts/default.html`
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- **Styling**: Edit `assets/css/style.css`
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### Page-Specific Changes
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- **Content**: Edit the respective `.md` file in each directory
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- **Page Title/Description**: Edit the front matter at the top of each `.md` file
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## 🚀 Deployment
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This site is automatically deployed to GitHub Pages when you push to the `main` branch. No manual deployment needed!
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## 📋 Features
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- ✅ **Responsive Design**: Works on all devices
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- ✅ **SEO Optimized**: Proper meta tags and structure
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- ✅ **Fast Loading**: Static files, optimized for speed
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- ✅ **Easy Updates**: Data-driven content management
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- ✅ **Professional Design**: Clean, academic aesthetic
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- ✅ **Accessibility**: Proper semantic HTML and alt tags
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## 🔧 Technical Details
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- **Jekyll Version**: 4.3.4
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- **Ruby Version**: 2.7+
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- **CSS**: Custom stylesheet with responsive design
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- **Images**: Optimized for web with proper alt tags
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- **Navigation**: Automatic active state highlighting
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## 📞 Contact
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For questions about the website or lab, contact:
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- **Email**: a.akrami@ucl.ac.uk
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- **Institution**: Sainsbury Wellcome Centre, UCL
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- **Location**: London, UK
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---
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*This website showcases the research and people of the LIM Lab, contributing to our understanding of learning, inference, and memory in the brain.*

‎TEMPLATE_README.md‎

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