created output for one cell that was wrong

Author: DanielaSchacherer

notebooks/collections_demos/RMS-Mutation-Prediction-Expert-Annotations_exploration.ipynb

@@ -1,15 +1,5 @@
 {
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-        "<a href=\"https://colab.research.google.com/github/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/collections_demos/RMS-Mutation-Prediction-Expert-Annotations_exploration.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
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@@ -228,12 +218,7 @@
       "cell_type": "code",
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       "source": [
@@ -263,7 +248,6 @@
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@@ -1321,15 +1305,58 @@
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-      "outputs": [],
+      "outputs": [
+        {
+          "output_type": "stream",
+          "name": "stdout",
+          "text": [
+            "Finding type: Embryonal rhabdomyosarcoma\n",
+            "ROI GraphicTypeValues3D.POLYGON\n",
+            "[[11.30286503 43.74634171  0.        ]\n",
+            " [11.35742664 43.56674576  0.        ]\n",
+            " [11.39279079 43.45231628  0.        ]\n",
+            " ...\n",
+            " [11.30842304 43.76276016  0.        ]\n",
+            " [11.30842304 43.75720596  0.        ]\n",
+            " [11.30286503 43.74634171  0.        ]]\n",
+            "ROI refers to FrameOfReferenceUID: 1.3.6.1.4.1.5962.99.1.3178953502.1272538196.1686806166302.7.0\n",
+            "\n",
+            "\n",
+            "Finding type: Embryonal rhabdomyosarcoma\n",
+            "ROI GraphicTypeValues3D.POLYGON\n",
+            "[[ 9.6064043  37.8423233   0.        ]\n",
+            " [ 9.6607132  37.67055511  0.        ]\n",
+            " [ 9.66349125 37.65438843  0.        ]\n",
+            " ...\n",
+            " [ 9.59806824 37.86126709  0.        ]\n",
+            " [ 9.59806824 37.85848999  0.        ]\n",
+            " [ 9.6064043  37.8423233   0.        ]]\n",
+            "ROI refers to FrameOfReferenceUID: 1.3.6.1.4.1.5962.99.1.3178953502.1272538196.1686806166302.7.0\n",
+            "\n",
+            "\n",
+            "Finding type: Embryonal rhabdomyosarcoma\n",
+            "ROI GraphicTypeValues3D.POLYGON\n",
+            "[[ 7.47041845 34.06241608  0.        ]\n",
+            " [ 7.45526218 33.97905731  0.        ]\n",
+            " [ 7.44642115 33.96390152  0.        ]\n",
+            " ...\n",
+            " [ 7.46915531 34.06115341  0.        ]\n",
+            " [ 7.46915531 34.05862808  0.        ]\n",
+            " [ 7.47041845 34.06241608  0.        ]]\n",
+            "ROI refers to FrameOfReferenceUID: 1.3.6.1.4.1.5962.99.1.3178953502.1272538196.1686806166302.7.0\n",
+            "\n",
+            "\n"
+          ]
+        }
+      ],
       "source": [
         "# Extract different attributes from the measurement group\n",
         "for m_group in planar_measurement_groups_example1[:3]:\n",
@@ -3528,7 +3555,7 @@
       "source": [
         "# Advanced topic: Querying annotations using BigQuery\n",
         "\n",
-        "In the exercises above we fetched all of the DICOM SR files before examining them locally using highdicom. \n",
+        "In the exercises above we fetched all of the DICOM SR files before examining them locally using highdicom.\n",
         "Yet, all of the metadata available in IDC's DICOM files are also extracted to and searchable in Google BigQuery tables. With BigQuery search, you do not need to download anything if all you need to do is examine the metadata.\n",
         "\n",
         "If you would like to use BigQuery, you will need to complete the advanced prerequisites in [part 1](https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/getting_started/part1_prerequisites.ipynb) of the \"Getting started\" tutorial series before running the following cells. You can also check out [part 3](https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/getting_started/part3_exploring_cohorts.ipynb) of that series to get started with the IDC BigQuery content.\n",
@@ -3553,7 +3580,7 @@
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-      "execution_count": 3,
+      "execution_count": null,
       "metadata": {
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           "base_uri": "https://localhost:8080/",
@@ -4018,7 +4045,6 @@
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       "provenance": [],
       "toc_visible": true
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@@ -4032,4 +4058,4 @@
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+}