tox

Author: cmungall

tox.ini

@@ -0,0 +1,66 @@
+# Tox (http://tox.testrun.org/) is a tool for running tests
+# in multiple virtualenvs. This configuration file will run the
+# test suite on all supported python versions. To use it, "pip install tox"
+# and then run "tox" from this directory.
+
+[tox]
+isolated_build = true
+envlist =
+    lint
+    flake8
+
+[testenv:lint]
+deps =
+    black
+    isort
+skip_install = true
+commands =
+    black .
+    isort .
+description = Run linters.
+
+[testenv:flake8]
+skip_install = true
+deps =
+    flake8<5.0.0
+    flake8-bandit
+    flake8-black
+    flake8-bugbear
+    flake8-colors
+    flake8-isort
+    pep8-naming
+commands =
+    flake8 src/ tests/
+description = Run the flake8 tool with several plugins (bandit, docstrings, import order, pep8 naming).
+
+#########################
+# Flake8 Configuration  #
+# (.flake8)             #
+#########################
+[flake8]
+ignore =
+    E203
+    W503
+    C901 # needs code change so ignoring for now.
+    E731 # needs code change so ignoring for now.
+    S101 # asserts are fine
+    S106 # flags false positives with test_table_filler
+    N801 # mixed case is bad but there's a lot of auto-generated code
+    N815 # same ^
+    S404 # Consider possible security implications associated with the subprocess module.
+    S108 # Probable insecure usage of temp file/directory.
+    S307 # Use of possibly insecure function - consider using safer ast.literal_eval.
+    S603 # subprocess call - check for execution of untrusted input.
+    S607 # Starting a process with a partial executable path ["open" in both cases]
+    S608 # Possible SQL injection vector through string-based query construction.
+    B024 # StreamingWriter is an abstract base class, but it has no abstract methods. 
+         # Remember to use @abstractmethod, @abstractclassmethod and/or @abstractproperty decorators.
+max-line-length = 120
+max-complexity = 13
+import-order-style = pycharm
+application-import-names =
+    oaklib
+    tests
+exclude =
+    datamodels   ## datamodels are auto-generated
+    sqla