Merge pull request #52 from INCATools/more-sources

Additional sources

Author: cmungall

.gitignore

@@ -28,3 +28,5 @@ tmp/
 .template.db
 ./owl/
 reports/
+db/
+notesbooks/*.db

Makefile

@@ -138,6 +138,9 @@ db/phenio.owl:
 db/bero.owl:
 	curl -L -s https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl > $@.tmp && mv $@.tmp $@
 
+db/aio.owl:
+	curl -L -s https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.owl > $@.tmp && mv $@.tmp $@
+
 db/reacto.owl:
 	curl -L -s http://purl.obolibrary.org/obo/go/extensions/reacto.owl > $@.tmp && mv $@.tmp $@
 
@@ -147,6 +150,9 @@ db/go-lego.owl:
 db/bao.owl:
 	robot merge -I http://www.bioassayontology.org/bao/bao_complete.owl -o $@
 
+db/biolink.owl:
+	robot merge -I https://w3id.org/biolink/biolink-model.owl.ttl -o $@
+
 # https://github.com/ontodev/rdftab.rs/issues/21
 db/biopax.owl:
 	robot convert -I http://www.biopax.org/release/biopax-level3.owl -o $@

attic/prefixes/prefix.sql

@@ -0,0 +1,23 @@
+# ---
+### RDFTab
+# ---
+# from https://github.com/obi-ontology/obi/blob/master/Makefile#L49
+#
+# Use RDFTab to create SQLite databases from OWL files.
+UNAME := $(shell uname)
+ifeq ($(UNAME), Darwin)
+	RDFTAB_URL := https://github.com/ontodev/rdftab.rs/releases/download/v0.1.1/rdftab-x86_64-apple-darwin
+	SED = sed -i.bak
+else
+	RDFTAB_URL := https://github.com/ontodev/rdftab.rs/releases/download/v0.1.1/rdftab-x86_64-unknown-linux-musl
+	SED = sed -i
+endif
+
+bin/rdftab:
+	curl -L -o $@ $(RDFTAB_URL)
+	chmod +x $@
+
+RG_VERSION=2.2.0
+bin/relation-graph:
+	curl -L -s https://github.com/balhoff/relation-graph/releases/download/v$(RG_VERSION)/relation-graph-cli-$(RG_VERSION).tgz | tar -zxv  && mv relation-graph-cli-$(RG_VERSION) relation-graph && (cd bin && ln -s ../relation-graph/bin/relation-graph)
+