adding individuals

Author: cmungall

Makefile

@@ -159,9 +159,9 @@ db/efo.owl: STAMP
 	robot merge -I http://www.ebi.ac.uk/efo/efo.owl -o $@
 
 
-db/reactome-Homo-sapiens.owl: download/reactome-biopax.zip
+db/reactome-Homo-sapiens.owl: download/reactome-biopax.zip db/biopax.owl
 	unzip -p $< Homo_sapiens.owl > $@.tmp &&\
-	robot merge -i $@.tmp  -I 
+	robot merge -i $@.tmp  -i db/biopax.owl -o $@
 
 download/reactome-biopax.zip:
 	curl -L -s https://reactome.org/download/current/biopax.zip > $@

src/semsql/builder/build.Makefile

@@ -70,6 +70,7 @@ $(TEMPLATE): $(THIS_DIR)/sql_schema/semsql.sql
                        --ontology-file $<\
                        --output-file $@.ttl.tmp \
                        --equivalence-as-subclass true \
+	               --output-individuals true \
 	               --output-subclasses true \
                        --reflexive-subclasses true && \
 	riot --out RDFXML $@.ttl.tmp > $@.owl.tmp && \