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Makefile

Lines changed: 12 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -107,19 +107,28 @@ reports/%.problems.tsv: db/%.db target/%.views
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# Downloads
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# ---
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STAMP:
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touch $@
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# download OWL, ensuring converted to RDF/XML
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db/%.owl:
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db/%.owl: STAMP
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# curl -L -s http://purl.obolibrary.org/obo/$*.owl > $@.tmp && mv $@.tmp $@
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robot merge -I http://purl.obolibrary.org/obo/$*.owl -o $@
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.PRECIOUS: db/%.owl
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db/go.owl:
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db/go.owl: STAMP
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curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-plus.owl > $@
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db/monarch.owl:
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robot merge -I http://purl.obolibrary.org/obo/upheno/monarch.owl -o $@
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db/efo.owl:
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db/phenio.owl:
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curl -L -s https://kg-hub.berkeleybop.io/frozen_incoming_data/phenio-base.owl.tar.gz > $@.tmp && mv $@.tmp $@
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db/bero.owl:
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curl -L -s https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl > $@.tmp && mv $@.tmp $@
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db/efo.owl: STAMP
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robot merge -I http://www.ebi.ac.uk/efo/efo.owl -o $@
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#fma.owl:#

ddl/semsql.sql

Lines changed: 0 additions & 1616 deletions
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