add init file and update version

add init file and update version

Author: taigw

pymic/net_run_nll/__init__.py

@@ -4,7 +4,7 @@
 import numpy as np
 import random
 import torch
-from torhc.optim import lr_scheduler
+from torch.optim import lr_scheduler
 from pymic.loss.seg.util import get_soft_label
 from pymic.loss.seg.util import reshape_prediction_and_ground_truth
 from pymic.loss.seg.util import get_classwise_dice

pymic/net_run_ssl/__init__.py

@@ -3,7 +3,7 @@
 import logging
 import numpy as np
 import torch
-from torhc.optim import lr_scheduler
+from torch.optim import lr_scheduler
 from pymic.loss.seg.util import get_soft_label
 from pymic.loss.seg.util import reshape_prediction_and_ground_truth
 from pymic.loss.seg.util import get_classwise_dice

pymic/net_run_wsl/__init__.py

@@ -0,0 +1,12 @@
+matplotlib>=3.1.2
+numpy>=1.17.4
+pandas>=0.25.3
+python>=3.6
+scikit-image>=0.16.2
+scikit-learn>=0.22
+scipy>=1.3.3
+SimpleITK>=1.2.4
+tensorboard>=2.1.0
+tensorboardX>=1.9
+torch>=1.7.1
+torchvision>=0.8.2

pymic/net_run_wsl/wsl_dmpls.py

@@ -3,15 +3,15 @@
 
 # Get the summary
 description = 'An open-source deep learning platform' + \
-              ' for medical image computing'
+              ' for annotation-efficient medical image computing'
 
 # Get the long description
 with open('README.md', encoding='utf-8') as f:
     long_description = f.read()
 
 setuptools.setup(
     name    = 'PYMIC',
-    version = "0.2.5",
+    version = "0.3.0",
     author  ='PyMIC Consortium',
     author_email = 'wguotai@gmail.com',
     description  = description,
@@ -31,6 +31,8 @@
         'console_scripts': [
             'pymic_run  = pymic.net_run.net_run:main',
             'pymic_ssl  = pymic.net_run_ssl.ssl_main:main',
+            'pymic_wsl  = pymic.net_run_wsl.wsl_main:main',
+            'pymic_nll  = pymic.net_run_nll.nll_main:main',
             'pymic_eval_cls = pymic.util.evaluation_cls:main',
             'pymic_eval_seg = pymic.util.evaluation_seg:main'
         ],