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[scripts/release_tests] Add pypi test odml script
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‎scripts/release_tests/resources/scripts/test_odml_basics.py‎

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import sys
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import unittest
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try:
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# Test possible imports of all parsers without importing the full odML package
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from odml.tools import ODMLReader, ODMLWriter, RDFReader, RDFWriter
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from odml.tools.converters import FormatConverter, VersionConverter
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from odml.tools import XMLReader, XMLWriter, DictReader, DictWriter
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import odml
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except Exception as exc:
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print("-- Failed on an import: %s" % exc)
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sys.exit(-1)
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class TestODMLBasics(unittest.TestCase):
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def test_load(self):
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print("-- Load odml xml file")
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xdoc = odml.load('./load.odml.xml')
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print(xdoc.pprint())
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print("-- Load odml json file")
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jdoc = odml.load('./load.odml.json', 'JSON')
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self.assertEqual(xdoc, jdoc)
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print("-- Load odml yaml file")
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ydoc = odml.load('./load.odml.yaml', 'YAML')
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self.assertEqual(xdoc, ydoc)
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print("-- Document loading tests success")
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def test_version_load(self):
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print("-- Test invalid version exception xml file load")
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with self.assertRaises(odml.tools.parser_utils.InvalidVersionException):
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_ = odml.load('./load_v1.odml.xml')
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print("-- Invalid version loading test success")
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def test_tools_init(self):
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_ = ODMLReader()
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_ = ODMLWriter()
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_ = RDFReader()
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_ = RDFWriter([odml.Document()])
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_ = FormatConverter()
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_ = VersionConverter("/I/do/not/exist.txt")
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_ = XMLReader()
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_ = XMLWriter(odml.Document())
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_ = DictReader()
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_ = DictWriter()
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if __name__ == "__main__":
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try:
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svi = sys.version_info
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print("-- Using Python '%s.%s.%s'" % (svi.major, svi.minor, svi.micro))
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print("-- Testing odml Version: '%s'" % odml.VERSION)
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unittest.main()
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except Exception as exc:
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print("-- Failed on a test: %s" % exc)
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sys.exit(-1)

‎scripts/release_tests/resources/test_convert_script/2010-04-16-ab_cutoff_300_contrast_20%.xml‎

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<?xml version="1.0" encoding="UTF-8"?>
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<?xml-stylesheet type="text/xsl" href="odmlTerms.xsl"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl"?>
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<odML version="1">
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<section>
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<property>
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<value>true</value>
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<name>LocalAnaesthesia</name>
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</property>
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<property>
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<value>true</value>
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<name>Anaesthesia</name>
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</property>
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<property>
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<value>120.0<unit>mg</unit></value>
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<name>AnaestheticDose</name>
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</property>
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<property>
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<value>MS 222</value>
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<name>Anaesthetic</name>
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</property>
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<property>
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<value>Pancuronium bromide</value>
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<name>Immobilization</name>
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</property>
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<property>
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<value>in vivo</value>
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<name>Type</name>
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</property>
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<property>
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<value>Lidocaine</value>
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<name>LocalAnaesthetic</name>
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</property>
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<name>Preparation</name>
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<type>Preparation</type>
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</section>
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<section>
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<property>
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<value>0.0<unit>um</unit></value>
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<name>Depth</name>
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</property>
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<property>
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<value>P-unit</value>
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<name>CellType</name>
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</property>
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<property>
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<value>Nerve</value>
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<name>Structure</name>
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</property>
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<property>
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<value>0.202</value>
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<name>CV</name>
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</property>
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<property>
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<value>136.8<unit>Hz</unit></value>
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<name>Baseline rate</name>
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</property>
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<name>Cell</name>
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<type>Cell</type>
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</section>
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<section>
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<property>
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<value>Jan Benda</value>
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<name>Maintainer</name>
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</property>
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<property>
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<value>Jan Benda</value>
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<name>Creator</name>
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</property>
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<property>
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<value>Ludwig-Maximilian University, Munich</value>
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<name>University</name>
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</property>
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<property>
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<value>Jan Benda</value>
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<name>Lab</name>
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</property>
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<property>
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<value>D01-043</value>
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<name>Location</name>
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</property>
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<property>
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<value>Grosshaderner Str. 2, 82152 Planegg-Martinsried, Germany</value>
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<name>Address</name>
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</property>
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<property>
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<value>Department Biology II, LMU-Munich</value>
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<name>Department</name>
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</property>
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<property>
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<value>eFish-Setup</value>
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<name>Identifier</name>
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</property>
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<name>Setup</name>
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<type>Setup</type>
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</section>
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<section>
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<property>
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<value>weak response</value>
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<name>Comment</name>
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</property>
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<property>
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<value>2010-04-16-ab</value>
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<name>Name</name>
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</property>
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<property>
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<value>Good</value>
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<name>Recording quality</name>
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</property>
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<property>
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<value>0.9.6 (04/12/10)</value>
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<name>Software version</name>
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</property>
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<property>
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<value>Henriette Walz</value>
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<name>Experimenter</name>
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</property>
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<property>
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<value>Acquisition</value>
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<name>Mode</name>
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</property>
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<property>
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<value>metadata.xml</value>
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<name>File</name>
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</property>
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<property>
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<value>16:35:51</value>
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<name>Time</name>
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</property>
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<property>
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<value>2010-04-16</value>
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<name>Date</name>
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</property>
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<property>
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<value>13.9<unit>m</unit></value>
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<name>Recording duration</name>
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</property>
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<property>
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<value>/home/efish/relacs/plugins/efish/2010-04-16-ab</value>
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<name>Folder</name>
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</property>
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<property>
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<value>RELACS</value>
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<name>Software</name>
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</property>
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<name>Recording</name>
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<type>Recording</type>
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</section>
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<section>
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<property>
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<value>136.0<unit>Hz</unit></value>
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<name>Firing Rate1</name>
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</property>
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<property>
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<value>1007.0<unit>Hz</unit></value>
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<name>EOD Frequency</name>
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</property>
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<property>
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<value>0.14</value>
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<name>P-Value1</name>
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</property>
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<name>Cell properties</name>
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<type>Cell properties</type>
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</section>
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<section>
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<property>
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<value>unknown</value>
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<name>Gender</name>
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</property>
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<property>
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<value>Apteronotus albifrons</value>
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<name>Species</name>
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</property>
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<property>
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<value>13.0<unit>cm</unit></value>
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<name>Size</name>
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</property>
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<property>
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<value>1.82<unit>mV</unit></value>
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<name>Transdermal amplitude</name>
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</property>
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<property>
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<value>1003.4<unit>Hz</unit></value>
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<name>EOD Frequency</name>
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</property>
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<name>Subject</name>
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<type>Subject</type>
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</section>
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<section>
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<property>
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<value>300.0<unit>Hz</unit><type>float</type></value>
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<name>UpperCutoffFrequency</name>
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</property>
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<property>
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<value>10.0<unit>s</unit><type>float</type></value>
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<name>Duration</name>
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</property>
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<property>
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<value>0.001<unit>s</unit><type>float</type></value>
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<name>SampleRate</name>
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</property>
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<property>
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<value>0.3<type>float</type></value>
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<name>StandardDeviation</name>
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</property>
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<property>
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<value>20.0<unit>%</unit></value>
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<name>Contrast</name>
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</property>
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<property>
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<value>/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat</value>
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<name>File</name>
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</property>
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<property>
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<value>none</value>
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<name>Additional noise</name>
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</property>
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<property>
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<value>0.0<unit>%</unit></value>
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<name>Additional noise contrast</name>
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</property>
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<property>
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<value>0.0<unit>Hz</unit></value>
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<name>Additional noise upper cutoff</name>
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</property>
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<property>
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<value>0.0<unit>Hz</unit></value>
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<name>Additional noise lower cutoff</name>
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</property>
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<name>Stimulus</name>
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<type>stimulus/white_noise</type>
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</section>
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<author>grewe</author>
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</odML>

‎scripts/release_tests/resources/test_convert_script/test_broken/29.xml‎

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<?xml version="1.0" encoding="ISO-8859-1"?>
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<?xml-stylesheet type="text/xsl" href="odml.xsl" xmlns:odml="http://www.g-node.org/odml"?>
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<odML version="1">
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<repository>http://portal.g-node.org/odml/terminologies/v1.0/terminologies.xml</repository>
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</odML>

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