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[test/versionConv int] Add yaml test
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‎test/resources/version_conversion_int.yaml‎

Lines changed: 195 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,195 @@
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Document:
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author: author
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date: '2018-02-02'
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repository: http://portal.g-node.org/odml/terminologies/v1.0/terminologies.xml
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sections:
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- definition: def s1
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include: url s1
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link: somewhere s1
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name: sec_one
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properties:
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- definition: def prop1
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dependency: dep p1
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dependency_value: dep val p1
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name: prop_one
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values:
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- dtype: string
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- string
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filename: filename val 1
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reference: ref val 1
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uncertainty: 11
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unit: arbitrary
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value: '1'
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- definition: def val 2
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 2
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reference: ref val 2
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uncertainty: 12
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unit: arbitrary 2
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value: '2'
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- definition: def val 3
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dtype: !!python/object/apply:odml.dtypes.DType
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- string
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filename: filename val 3
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reference: ref val 3
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uncertainty: 13
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unit: arbitrary 3
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value: '3'
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- definition: def prop2
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dependency: dep p2
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dependency_value: dep val p2
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name: prop_two
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values:
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- dtype: string
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '1'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '2'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '3'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def prop3
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dependency: dep p3
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dependency_value: dep val p3
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name: prop_three
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values:
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- dtype: string
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reference: ref s1
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sections:
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- definition: def subs1
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include: url subs1
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link: somewhere subs1
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name: subsection one
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properties:
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- definition: def prop1
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dependency: dep p1
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dependency_value: dep val p1
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name: prop one
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values:
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- dtype: string
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- definition: def prop3
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dependency: dep p3
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dependency_value: dep val p3
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name: prop three
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values:
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- dtype: string
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '4'
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- definition: def val 1
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dtype: !!python/object/apply:odml.dtypes.DType
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- int
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filename: filename val 1
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reference: ref val 1
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uncertainty: 12
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unit: arbitrary
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value: '2'
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- definition: def prop2
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dependency: dep p2
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dependency_value: dep val p2
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name: prop two
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values:
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- dtype: string
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reference: ref subs1
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sections: []
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type: subsec
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type: mainsec
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- definition: def s2
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include: url s2
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link: somewhere s2
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name: section two
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properties: []
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reference: ref s2
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sections: []
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type: mainsec
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- definition: def s3
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include: url s3
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link: somewhere s3
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name: section three
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properties: []
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reference: ref s3
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sections: []
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type: mainsec
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version: v1.13
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odml-version: '1'

‎test/test_version_converter_integration.py‎

Lines changed: 46 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -16,21 +16,22 @@ class TestVersionConverterIntegration(unittest.TestCase):
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def setUp(self):
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# Set up test environment
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dir_path = os.path.dirname(os.path.realpath(__file__))
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self.xmlfile = os.path.join(dir_path, "resources", "version_conversion_int.xml")
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self.yamlfile = os.path.join(dir_path, "resources", "version_conversion_int.yaml")
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self.tmp_dir = tempfile.mkdtemp(suffix=".odml")
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self.outfile = os.path.join(self.tmp_dir, "version_conversion.xml")
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def tearDown(self):
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if os.path.exists(self.tmp_dir):
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shutil.rmtree(self.tmp_dir)
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def test_convert_xml(self):
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outfile = os.path.join(self.tmp_dir, "version_conversion.xml")
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VC(self.xmlfile).write_to_file(outfile)
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self.assertTrue(os.path.exists(outfile))
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VC(self.xmlfile).write_to_file(self.outfile)
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self.assertTrue(os.path.exists(self.outfile))
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doc = load(outfile)
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doc = load(self.outfile)
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repo = "http://portal.g-node.org/odml/terminologies/v1.1/terminologies.xml"
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self.assertEqual(doc.repository, repo)
@@ -61,3 +62,43 @@ def test_convert_xml(self):
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prop = sec.properties["prop_three"]
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self.assertEqual(len(prop.value), 0)
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def test_convert_yaml(self):
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with self.assertRaises(Exception):
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VC(self.yamlfile).write_to_file(self.outfile)
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VC(self.yamlfile).write_to_file(self.outfile, "YAML")
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self.assertTrue(os.path.exists(self.outfile))
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doc = load(self.outfile)
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# Test document attribute export
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self.assertEqual(doc.author, "author")
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self.assertEqual(doc.version, "v1.13")
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repo = "http://portal.g-node.org/odml/terminologies/v1.1/terminologies.xml"
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self.assertEqual(doc.repository, repo)
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self.assertEqual(len(doc.sections), 3)
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sec = doc.sections["sec_one"]
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self.assertEqual(sec.definition, "def s1")
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self.assertEqual(sec.reference, "ref s1")
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self.assertEqual(sec.type, "mainsec")
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self.assertEqual(len(sec.sections), 1)
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self.assertEqual(len(sec.properties), 3)
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prop = sec.properties["prop_one"]
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self.assertEqual(prop.definition, "def prop1")
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self.assertEqual(prop.dependency, "dep p1")
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self.assertEqual(prop.dependency_value, "dep val p1")
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self.assertEqual(prop.reference, "ref val 1")
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self.assertEqual(prop.uncertainty, "11")
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self.assertEqual(prop.unit, "arbitrary")
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self.assertEqual(prop.value_origin, "filename val 1")
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self.assertEqual(prop.dtype, "string")
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self.assertEqual(len(prop.value), 3)
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prop = sec.properties["prop_two"]
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self.assertEqual(len(prop.value), 8)
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prop = sec.properties["prop_three"]
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self.assertEqual(len(prop.value), 0)

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