We need to make sure the data generated by the Run process is valid.
We can run something as simple as gzip -t or validate the fastq format with FastqValidator or validate the number of reads by making sure we have exactly the number of reads that are expected using
- number of reads Conversion file
- number of reads removed in the Adapter filtering
- number of reads remove in fastqfilterer steps
We need to make sure the data generated by the Run process is valid.
We can run something as simple as
gzip -tor validate the fastq format with FastqValidator or validate the number of reads by making sure we have exactly the number of reads that are expected using