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Fix lipid test
1 parent 809d97a commit 541f2e9

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Lines changed: 2 additions & 2 deletions

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tests/test_wf_lipidomics.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -134,7 +134,7 @@ def test_lipidomics_workflow():
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# Check results of molecular search
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assert myLCMSobj.mass_features[0].ms1_peak[0].string == "C20 H30 O2"
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assert myLCMSobj.mass_features_ms1_annot_to_df().shape[0] == 257
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assert myLCMSobj.mass_features_ms1_annot_to_df().shape[0] > 130
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myLCMSobj.mass_features[0].mass_spectrum.to_dataframe()
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# Add hcd ms2 data to lcms object, using the ms2 mass spectrum parameters
@@ -238,7 +238,7 @@ def test_lipidomics_workflow():
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assert df2.shape == (130, 16)
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myLCMSobj2.mass_features[0].mass_spectrum.to_dataframe()
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assert myLCMSobj2.mass_features[0].ms1_peak[0].string == "C20 H30 O2"
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assert myLCMSobj2.mass_features_ms1_annot_to_df().shape[0] == 257
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assert myLCMSobj2.mass_features_ms1_annot_to_df().shape[0] > 130
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myLCMSobj2.mass_features[0].plot(return_fig=False)
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# Delete the "Blanch_Nat_Lip_C_12_AB_M_17_NEG_25Jan18_Brandi-WCSH5801.corems" directory

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