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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -82,7 +82,7 @@ def test_lipidomics_workflow():
8282 ms1_params .mass_spectrum .noise_min_mz , ms1_params .mass_spectrum .min_picking_mz = 0 , 0
8383 ms1_params .mass_spectrum .noise_max_mz , ms1_params .mass_spectrum .max_picking_mz = np .inf , np .inf
8484 ms1_params .ms_peak .legacy_resolving_power = False
85- ms1_params .molecular_search .url_database = "postgresql://coremsdb:coremsmolform@postgres:5432/molformula "
85+ ms1_params .molecular_search .url_database = ""
8686 ms1_params .molecular_search .usedAtoms = {
8787 'C' : (10 , 30 ),
8888 'H' : (18 , 200 ),
@@ -192,6 +192,7 @@ def test_lipidomics_workflow():
192192 exporter .report_to_csv (molecular_metadata = lipid_metadata )
193193 report = exporter .to_report (molecular_metadata = lipid_metadata )
194194 assert report ['Ion Formula' ][1 ] == 'C24 H47 O2'
195+ assert report ['Lipid Species' ][1 ] == 'FA 24:0'
195196
196197 # Import the hdf5 file, assert that its df is same as above and that we can plot a mass feature
197198 parser = ReadCoreMSHDFMassSpectra (
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