corrected the rendering issue in the data structures tutorials

Author: Andrew Delman

Tutorials_as_Jupyter_Notebooks/ECCO_v4_Coordinates_and_Dimensions_of_ECCOv4_NetCDF_files.ipynb

@@ -1397,8 +1397,7 @@
        "</svg>\n",
        "        </td>\n",
        "    </tr>\n",
-       "</table></div></li></ul></div></li><li class='xr-section-item'><input id='section-5d5087b8-93b9-40e6-9cff-0bbce514ce49' class='xr-section-summary-in' type='checkbox'  checked><label for='section-5d5087b8-93b9-40e6-9cff-0bbce514ce49' class='xr-section-summary' >Data variables: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>THETA</span></div><div class='xr-var-dims'>(time, k, tile, j, i)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1, 50, 13, 90, 90), meta=np.ndarray&gt;</div><input id='attrs-40b96475-da7f-4f22-aada-9f739fd0adbf' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-40b96475-da7f-4f22-aada-9f739fd0adbf' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-f7dec3d8-46fe-4cca-a506-b9651f1a90e2' class='xr-var-data-in' type='checkbox'><label for='data-f7dec3d8-46fe-4cca-a506-b9651f1a90e2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>Potential temperature </dd><dt><span>units :</span></dt><dd>degree_C</dd><dt><span>coverage_content_type :</span></dt><dd>modelResult</dd><dt><span>standard_name :</span></dt><dd>sea_water_potential_temperature</dd><dt><span>comment :</span></dt><dd>Sea water potential temperature is the temperature a parcel of sea water would have if moved adiabatically to sea level pressure. Note: the equation of state is a modified UNESCO formula by Jackett and McDougall (1995), which uses the model variable potential temperature as input assuming a horizontally and temporally constant pressure of $p_0=-g \r",
-       "ho_{0} z$.</dd><dt><span>valid_min :</span></dt><dd>-2.2909388542175293</dd><dt><span>valid_max :</span></dt><dd>36.032955169677734</dd></dl></div><div class='xr-var-data'><table>\n",
+       "</table></div></li></ul></div></li><li class='xr-section-item'><input id='section-5d5087b8-93b9-40e6-9cff-0bbce514ce49' class='xr-section-summary-in' type='checkbox'  checked><label for='section-5d5087b8-93b9-40e6-9cff-0bbce514ce49' class='xr-section-summary' >Data variables: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>THETA</span></div><div class='xr-var-dims'>(time, k, tile, j, i)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1, 50, 13, 90, 90), meta=np.ndarray&gt;</div><input id='attrs-40b96475-da7f-4f22-aada-9f739fd0adbf' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-40b96475-da7f-4f22-aada-9f739fd0adbf' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-f7dec3d8-46fe-4cca-a506-b9651f1a90e2' class='xr-var-data-in' type='checkbox'><label for='data-f7dec3d8-46fe-4cca-a506-b9651f1a90e2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>Potential temperature </dd><dt><span>units :</span></dt><dd>degree_C</dd><dt><span>coverage_content_type :</span></dt><dd>modelResult</dd><dt><span>standard_name :</span></dt><dd>sea_water_potential_temperature</dd><dt><span>comment :</span></dt><dd>Sea water potential temperature is the temperature a parcel of sea water would have if moved adiabatically to sea level pressure. Note: the equation of state is a modified UNESCO formula by Jackett and McDougall (1995), which uses the model variable potential temperature as input assuming a horizontally and temporally constant pressure of $p_0=-g \\rho_{0} z$.</dd><dt><span>valid_min :</span></dt><dd>-2.2909388542175293</dd><dt><span>valid_max :</span></dt><dd>36.032955169677734</dd></dl></div><div class='xr-var-data'><table>\n",
        "    <tr>\n",
        "        <td>\n",
        "            <table>\n",
@@ -6098,27 +6097,6 @@
     "wd_masked.isel(k_l=0,tile=1,time=0).plot(cmap='jet', vmin=-1.e-7,vmax=1.e-7)"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": 27,
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "(1, 50, 13, 90, 90)"
-      ]
-     },
-     "execution_count": 27,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "wd_masked = vel_dataset.WVEL.where(grid_dataset.hFacC.values > 0, np.nan)\n",
-    "wd_masked.shape"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {},

Tutorials_as_Jupyter_Notebooks/ECCO_v4_data_structure_basics.ipynb

@@ -1540,8 +1540,7 @@
        "</svg>\n",
        "        </td>\n",
        "    </tr>\n",
-       "</table></div></li></ul></div></li><li class='xr-section-item'><input id='section-aa8ffd36-176c-4bbb-9971-d9d0a4b6f219' class='xr-section-summary-in' type='checkbox'  checked><label for='section-aa8ffd36-176c-4bbb-9971-d9d0a4b6f219' class='xr-section-summary' >Data variables: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>THETA</span></div><div class='xr-var-dims'>(time, k, tile, j, i)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1, 50, 13, 90, 90), meta=np.ndarray&gt;</div><input id='attrs-f9751797-2f43-4d1b-8917-f5858f5e0c7b' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-f9751797-2f43-4d1b-8917-f5858f5e0c7b' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-6473fc3d-fddb-40f5-b5da-5ecd11705eb2' class='xr-var-data-in' type='checkbox'><label for='data-6473fc3d-fddb-40f5-b5da-5ecd11705eb2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>Potential temperature </dd><dt><span>units :</span></dt><dd>degree_C</dd><dt><span>coverage_content_type :</span></dt><dd>modelResult</dd><dt><span>standard_name :</span></dt><dd>sea_water_potential_temperature</dd><dt><span>comment :</span></dt><dd>Sea water potential temperature is the temperature a parcel of sea water would have if moved adiabatically to sea level pressure. Note: the equation of state is a modified UNESCO formula by Jackett and McDougall (1995), which uses the model variable potential temperature as input assuming a horizontally and temporally constant pressure of $p_0=-g \r",
-       "ho_{0} z$.</dd><dt><span>valid_min :</span></dt><dd>-2.2909388542175293</dd><dt><span>valid_max :</span></dt><dd>36.032955169677734</dd></dl></div><div class='xr-var-data'><table>\n",
+       "</table></div></li></ul></div></li><li class='xr-section-item'><input id='section-aa8ffd36-176c-4bbb-9971-d9d0a4b6f219' class='xr-section-summary-in' type='checkbox'  checked><label for='section-aa8ffd36-176c-4bbb-9971-d9d0a4b6f219' class='xr-section-summary' >Data variables: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>THETA</span></div><div class='xr-var-dims'>(time, k, tile, j, i)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1, 50, 13, 90, 90), meta=np.ndarray&gt;</div><input id='attrs-f9751797-2f43-4d1b-8917-f5858f5e0c7b' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-f9751797-2f43-4d1b-8917-f5858f5e0c7b' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-6473fc3d-fddb-40f5-b5da-5ecd11705eb2' class='xr-var-data-in' type='checkbox'><label for='data-6473fc3d-fddb-40f5-b5da-5ecd11705eb2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>Potential temperature </dd><dt><span>units :</span></dt><dd>degree_C</dd><dt><span>coverage_content_type :</span></dt><dd>modelResult</dd><dt><span>standard_name :</span></dt><dd>sea_water_potential_temperature</dd><dt><span>comment :</span></dt><dd>Sea water potential temperature is the temperature a parcel of sea water would have if moved adiabatically to sea level pressure. Note: the equation of state is a modified UNESCO formula by Jackett and McDougall (1995), which uses the model variable potential temperature as input assuming a horizontally and temporally constant pressure of $p_0=-g \\rho_{0} z$.</dd><dt><span>valid_min :</span></dt><dd>-2.2909388542175293</dd><dt><span>valid_max :</span></dt><dd>36.032955169677734</dd></dl></div><div class='xr-var-data'><table>\n",
        "    <tr>\n",
        "        <td>\n",
        "            <table>\n",