fixes to cloud environment setup scripts

Author: andrewdelman

Cloud_Setup/install_packages.sh

@@ -21,6 +21,8 @@ red_start='\033[0;31m'
 blue_start='\033[0;34m'
 nocolor_start='\033[0m'
 
+
+source ~/.bashrc
 mamba init
 
 # create jupyter environment

Cloud_Setup/install_packages_bigmem.sh

@@ -15,6 +15,7 @@ blue_start='\033[0;34m'
 nocolor_start='\033[0m'
 
 
+source ~/.bashrc
 conda init
 
 # create conda environment called 'jupyter'

Cloud_Setup/jupyter_env_setup.sh

@@ -1,11 +1,14 @@
 #!/bin/bash
 
+# get path of directory where script is located
+script_dir=$(dirname "$0")
+
 # install wget and tmux 
-sh ./install_wget_tmux.sh
+sh ${script_dir}/install_wget_tmux.sh
 
 # download and install miniforge/conda/mamba 
-sh ./install_conda_mamba.sh
+sh ${script_dir}/install_conda_mamba.sh
 
 # download and install a bunch of packages
 # including ecco_v4_py and jupyterlab
-sh ./install_packages_bigmem.sh
+sh ${script_dir}/install_packages_bigmem.sh