modernize and remove old episodes

Author: hschellman

_episodes/02-submit-jobs-w-justin.md

@@ -12,9 +12,12 @@ keypoints:
 
 #  PLEASE USE THE NEW [justIn](https://dunejustin.fnal.gov) SYSTEM INSTEAD OF POMS
 
-__The [justIn](https://dunejustin.fnal.gov) Tutorial is currently in docdb at: [JustIn Tutorial](https://docs.dunescience.org/cgi-bin/sso/RetrieveFile?docid=30145)__
+__A simple [justIn](https://dunejustin.fnal.gov) Tutorial is currently in docdb at: [JustIn Tutorial](https://docs.dunescience.org/cgi-bin/sso/RetrieveFile?docid=30145)__
 
-The [justIn](https://dunejustin.fnal.gov) system is describe in detail at: 
+A more detailed tutorial is available at:
+[JustIn Docs](https://dunejustin.fnal.gov/docs/)
+
+The [justIn](https://dunejustin.fnal.gov) system is described in detail at: 
 
 __[JustIn Home](https://dunejustin.fnal.gov/dashboard/)__
 

_episodes/07-grid-job-submission.md

@@ -1,5 +1,5 @@
 ---
-title: Grid Job Submission and Common Errors
+title: Jobsub Grid Job Submission and Common Errors - still 2024 version
 teaching: 65
 exercises: 0
 questions:
@@ -44,7 +44,9 @@ This lesson (07-grid-job-submission.md) was imported from the [Jan. 2023 lesson]
 
 Quiz blocks are added at the bottom of this page, and invite your review, modify, review, and additional comments.
 
-The official timetable for this training event is on the [Indico site](https://indico.fnal.gov/event/59762/timetable/#20230524).
+<!-- 
+The official timetable for this training event is on the [Indico site](https://indico.fnal.gov/event/59762/timetable/#20230524). 
+-->
 
 ## Notes on changes in the 2023/2024 versions
 
@@ -65,15 +67,18 @@ The past few months have seen significant changes in how DUNE (as well as other
 
 First, log in to a `dunegpvm` machine . Then you will need to set up the job submission tools (`jobsub`). If you set up `dunesw` it will be included, but if not, you need to do
 
-```bash
+~~~
 mkdir -p /pnfs/dune/scratch/users/${USER}/DUNE_tutorial_sep2025 # if you have not done this before
 mkdir -p /pnfs/dune/scratch/users/${USER}/sep2025tutorial
-```
+~~~
+{: ..language-bash}
+
 Having done that, let us submit a prepared script:
 
 ~~~
 jobsub_submit -G dune --mail_always -N 1 --memory=1000MB --disk=1GB --cpu=1 --expected-lifetime=1h  --singularity-image /cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest --append_condor_requirements='(TARGET.HAS_Singularity==true&&TARGET.HAS_CVMFS_dune_opensciencegrid_org==true&&TARGET.HAS_CVMFS_larsoft_opensciencegrid_org==true&&TARGET.CVMFS_dune_opensciencegrid_org_REVISION>=1105)' -e GFAL_PLUGIN_DIR=/usr/lib64/gfal2-plugins -e GFAL_CONFIG_DIR=/etc/gfal2.d file:///exp/dune/app/users/kherner/submission_test_singularity.sh
 ~~~
+{: ..language-bash}
 
 If all goes well you should see something like this:
 
@@ -112,6 +117,7 @@ Complete the authentication at:
 No web open command defined, please copy/paste the above to any web browser
 Waiting for response in web browser
 ~~~
+{: ..output}
 
 The user code will be different of course. In this particular case, you do want to follow the instructions and copy and paste the link into your browser (can be any browser). There is a time limit on it so its best to do it right away. Always choose Fermilab as the identity provider in the menu, even if your home institution is listed. After you hit log on, you'll get a message saying you approved the access request, and then after a short delay (may be several seconds) in the terminal you will see
 
@@ -125,6 +131,7 @@ Submitting job(s)
 .
 1 job(s) submitted to cluster 57110235.
 ~~~
+{: ..output}
 
 Now, let's look at some of these options in more detail.
 

index.md

@@ -48,8 +48,9 @@ By the end of this workshop, participants will know how to:
 
 There are additional materials provided that explain how to:
 
-* [Develop configuration files to control batch jobs]({{ site.baseurl }}/07-grid-job-submission)
-* [Use the [justIn](https://dunejustin.fnal.gov) system to process data]({{ site.baseurl }}/02-submit-jobs-w-justin)
+* Use the [justIn](https://dunejustin.fnal.gov) system to process data
+* [Develop configuration files to control jobsub batch jobs]({{ site.baseurl }}/07-grid-job-submission)
+
 
 
 You will need to be a DUNE Collaborator (listed member), and have a valid FNAL or CERN computing account to join the tutorial. Contact your  DUNE group leader for assistance.