diff --git a/.github/workflows/build-and-release.yml b/.github/workflows/build-and-release.yml index 5bd0b5b..52efc59 100644 --- a/.github/workflows/build-and-release.yml +++ b/.github/workflows/build-and-release.yml @@ -5,7 +5,10 @@ on: paths: - .github/workflows/build-and-release.yml - package.json + - package-lock.json - scripts/** + - tests/** + - tsconfig*.json - vite.config.ts - src/** - backend/** @@ -20,7 +23,55 @@ env: jobs: + regression: + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest, windows-latest] + + runs-on: ${{ matrix.os }} + + permissions: + contents: read + + env: + OUROBOROS_PLUGIN_RELEASE_TAG: v1.1.0-ci + OUROBOROS_PLUGIN_ARTIFACT: neuroglancer-plugin-v1.1.0-ci.zip + + steps: + - name: Check out Git repository + uses: actions/checkout@v7 + + - name: Install Node.js + uses: actions/setup-node@v7 + with: + node-version: 24 + cache: npm + + - name: Install npm + run: npm install --global npm@11.19.0 + + - name: Install locked dependencies + run: npm ci + + - name: Test directory protocol + run: npm test + + - name: Smoke Vite development entry points + run: npm run smoke:dev + + - name: Audit dependencies + if: runner.os == 'Linux' + run: npm audit --audit-level=moderate + + - name: Build release layout + run: npm run build:release + + - name: Validate release layout + run: npm run validate:release + plugin-artifact: + needs: regression runs-on: ubuntu-latest permissions: @@ -33,10 +84,14 @@ jobs: - name: Install Node.js uses: actions/setup-node@v7 with: - node-version: 20 + node-version: 24 + cache: npm + + - name: Install npm + run: npm install --global npm@11.19.0 - - name: Install Dependencies - run: npm install + - name: Install locked dependencies + run: npm ci - name: Set release metadata run: | @@ -58,6 +113,9 @@ jobs: filename: ${{ env.PLUGIN_ARTIFACT }} directory: 'dist' + - name: Validate release archive + run: npm run validate:archive -- "dist/${PLUGIN_ARTIFACT}" + - name: Upload artifact for PR validation uses: actions/upload-artifact@v7 with: diff --git a/.gitignore b/.gitignore index b02a1ff..dd5eba6 100644 --- a/.gitignore +++ b/.gitignore @@ -11,8 +11,6 @@ node_modules dist dist-ssr *.local -package-lock.json - # Editor directories and files .vscode/* !.vscode/extensions.json diff --git a/README.md b/README.md index 5e06253..ef294e6 100644 --- a/README.md +++ b/README.md @@ -14,13 +14,19 @@ Neuroglancer can do this natively, but the menu buttons integrate into Ouroboros ### Development -Make sure Docker is installed and running. +Use Node.js 24 and npm 11.19.0. Make sure Docker is installed and running. -1. `npm install` -2. `npm run dev` +1. `npm ci` +2. `npm test` +3. `npm run dev` To test in Ouroboros, run Ouroboros in development mode as well, and use the `Test Plugin` page to view the plugin. +For the directory-discovery integration smoke, use current Ouroboros `main`, +open a directory containing nested JSON files, and verify that Load JSON shows +the recursive tree. Switch quickly to a second root and confirm that late +responses from the first root do not replace the second tree. + ### Release artifact The current production pin for Ouroboros package builds is: diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..3424f00 --- /dev/null +++ b/package-lock.json @@ -0,0 +1,3660 @@ +{ + "name": "neuroglancer-plugin", + "version": "1.1.0", + "lockfileVersion": 3, + "requires": true, + "packages": { + "": { + "name": "neuroglancer-plugin", + "version": "1.1.0", + "dependencies": { + "react": "^18.3.1", + "react-dom": "^18.3.1" + }, + "devDependencies": { + "@types/node": "^24.13.3", + "@types/react": "^18.3.3", + "@types/react-dom": "^18.3.0", + "@typescript-eslint/eslint-plugin": "^7.15.0", + "@typescript-eslint/parser": "^7.15.0", + "@vitejs/plugin-react": "^4.7.0", + "concurrently": "^8.2.2", + "docker-compose": "^0.24.8", + "eslint": "^8.57.0", + "eslint-plugin-react-hooks": "^4.6.2", + 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"^4.2.3", + "y18n": "^5.0.5", + "yargs-parser": "^21.1.1" + }, + "engines": { + "node": ">=12" + } + }, + "node_modules/yargs-parser": { + "version": "21.1.1", + "dev": true, + "license": "ISC", + "engines": { + "node": ">=12" + } + }, + "node_modules/yocto-queue": { + "version": "0.1.0", + "dev": true, + "license": "MIT", + "engines": { + "node": ">=10" + }, + "funding": { + "url": "https://github.com/sponsors/sindresorhus" + } + } + } +} diff --git a/package.json b/package.json index 1d4152a..51b36d7 100644 --- a/package.json +++ b/package.json @@ -6,6 +6,11 @@ "dockerCompose": "./compose.yml", "private": true, "version": "1.1.0", + "packageManager": "npm@11.19.0", + "engines": { + "node": ">=24", + "npm": "11.19.0" + }, "type": "module", "main": "dist/main.js", "files": [ @@ -18,6 +23,10 @@ "build": "tsc -b && vite build", "build:release": "npm run build && node scripts/write-release-manifest.mjs", "validate:release": "node scripts/validate-release-manifest.mjs", + "validate:archive": "node scripts/validate-release-archive.mjs", + "test": "npm run typecheck:test && node --test tests/directoryRequests.test.ts", + "typecheck:test": "tsc --noEmit -p tsconfig.test.json", + "smoke:dev": "node scripts/smoke-vite-server.mjs", "lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0", "preview": "vite preview" }, @@ -26,18 +35,22 @@ "react-dom": "^18.3.1" }, "devDependencies": { + "@types/node": "^24.13.3", "@types/react": "^18.3.3", "@types/react-dom": "^18.3.0", "@typescript-eslint/eslint-plugin": "^7.15.0", "@typescript-eslint/parser": "^7.15.0", - "@vitejs/plugin-react": "^4.3.1", + "@vitejs/plugin-react": "^4.7.0", "concurrently": "^8.2.2", "docker-compose": "^0.24.8", "eslint": "^8.57.0", "eslint-plugin-react-hooks": "^4.6.2", "eslint-plugin-react-refresh": "^0.4.7", "typescript": "^5.2.2", - "vite": "^5.3.4", - "vite-plugin-static-copy": "^1.0.6" + "vite": "^6.4.3", + "vite-plugin-static-copy": "^2.3.2" + }, + "allowScripts": { + "esbuild": true } } diff --git a/scripts/smoke-vite-server.mjs b/scripts/smoke-vite-server.mjs new file mode 100644 index 0000000..ad5c2ea --- /dev/null +++ b/scripts/smoke-vite-server.mjs @@ -0,0 +1,66 @@ +import { spawn } from "node:child_process" +import { once } from "node:events" +import { join } from "node:path" + +const root = process.cwd() +const host = "127.0.0.1" +const port = 4173 +const server = spawn( + process.execPath, + [ + join(root, "node_modules", "vite", "bin", "vite.js"), + "--host", + host, + "--port", + String(port), + "--strictPort", + ], + { cwd: root, stdio: ["ignore", "pipe", "pipe"] }, +) + +let output = "" +server.stdout.on("data", (chunk) => { + output += chunk +}) +server.stderr.on("data", (chunk) => { + output += chunk +}) + +try { + for (const page of ["/", "/ngrefactor.html"]) { + const response = await waitForResponse(`http://${host}:${port}${page}`) + const html = await response.text() + assert(response.ok, `${page} returned HTTP ${response.status}`) + assert(html.includes(" setTimeout(resolve, milliseconds)) +} + +function assert(condition, message) { + if (!condition) throw new Error(message) +} diff --git a/scripts/validate-release-archive.mjs b/scripts/validate-release-archive.mjs new file mode 100644 index 0000000..c922949 --- /dev/null +++ b/scripts/validate-release-archive.mjs @@ -0,0 +1,54 @@ +import { spawnSync } from "node:child_process" +import { existsSync } from "node:fs" +import { readFile } from "node:fs/promises" +import { join, resolve } from "node:path" + +const root = process.cwd() +const archive = resolve(process.argv[2] ?? "") + +assert(process.argv[2], "usage: npm run validate:archive -- ") +assert(existsSync(archive), `release archive does not exist: ${archive}`) + +runUnzip(["-t", archive]) +const entries = new Set( + runUnzip(["-Z1", archive]) + .split(/\r?\n/u) + .filter(Boolean), +) + +for (const required of [ + "package.json", + "plugin-release.json", + "index.html", + "ngrefactor.html", + "icon.svg", + "compose.yml", + "Dockerfile", + "requirements.txt", + "app/main.py", +]) { + assert(entries.has(required), `release archive is missing ${required}`) +} + +const archivedManifest = runUnzip(["-p", archive, "plugin-release.json"]).trim() +const builtManifest = ( + await readFile(join(root, "dist", "plugin-release.json"), "utf8") +).trim() +assert( + archivedManifest === builtManifest, + "archived release manifest does not match the validated build manifest", +) + +console.log(`Validated release archive ${archive}.`) + +function runUnzip(args) { + const result = spawnSync("unzip", args, { encoding: "utf8" }) + if (result.status !== 0) { + throw new Error(result.stderr || result.stdout || "unzip failed") + } + return result.stdout +} + +function assert(condition, message) { + if (!condition) throw new Error(message) +} diff --git a/scripts/validate-release-manifest.mjs b/scripts/validate-release-manifest.mjs index 20ad371..cefe476 100644 --- a/scripts/validate-release-manifest.mjs +++ b/scripts/validate-release-manifest.mjs @@ -16,6 +16,36 @@ assert( existsSync(join(dist, packageJson.dockerCompose)), `release layout is missing ${packageJson.dockerCompose}` ) +for (const required of [ + 'ngrefactor.html', + 'Dockerfile', + 'requirements.txt', + 'app/main.py' +]) { + assert(existsSync(join(dist, required)), `release layout is missing ${required}`) +} + +const packagedPackageJson = JSON.parse( + await readFile(join(dist, 'package.json'), 'utf8') +) +assert(packagedPackageJson.name === packageJson.name, 'packaged name mismatch') +assert( + packagedPackageJson.version === packageJson.version, + 'packaged version mismatch' +) + +for (const htmlPath of ['index.html', 'ngrefactor.html']) { + const html = await readFile(join(dist, htmlPath), 'utf8') + const assetPaths = [...html.matchAll(/(?:src|href)=["']\.\/?(assets\/[^"']+)["']/gu)] + .map((match) => match[1]) + assert(assetPaths.length > 0, `${htmlPath} does not reference built assets`) + for (const assetPath of assetPaths) { + assert( + existsSync(join(dist, assetPath)), + `${htmlPath} references missing asset ${assetPath}` + ) + } +} const manifest = JSON.parse(await readFile(join(dist, 'plugin-release.json'), 'utf8')) diff --git a/src/App/directoryRequests.ts b/src/App/directoryRequests.ts new file mode 100644 index 0000000..4f231d2 --- /dev/null +++ b/src/App/directoryRequests.ts @@ -0,0 +1,88 @@ +export type DirectoryData = { + type: string + data: { + directoryPath: string | null + directoryName: string | null + nodes: NodeChildren + } +} + +export type FileSystemNode = { + name: string + path: string + children?: NodeChildren +} + +export type NodeChildren = { + [key: string]: FileSystemNode +} + +export type ParsedDirectoryContentsResponse = { + path: string + nodes: NodeChildren + error: Record | null +} + +export function createDirectoryContentsRequest(path: string, sequence: number) { + const requestId = `loadfile-${sequence}` + return { + requestId, + message: { + type: "request-directory-contents", + data: { + path, + recursive: true, + requestId, + }, + }, + } +} + +export function parseDirectoryContentsResponse( + message: unknown, + activeRequestId: string | null, +): ParsedDirectoryContentsResponse | null { + if (!activeRequestId || !isRecord(message) || !isRecord(message.data)) { + return null + } + + const data = message.data + if (data.requestId !== activeRequestId || typeof data.path !== "string") { + return null + } + + const error = isRecord(data.error) ? data.error : null + const errorCode = typeof error?.code === "string" ? error.code : null + const responseNodes = isRecord(data.nodes) + ? (data.nodes as NodeChildren) + : {} + const nodes = + errorCode === "denied" || + errorCode === "not-found" || + errorCode === "internal" + ? {} + : responseNodes + + return { path: data.path, nodes, error } +} + +export function applyDirectoryContentsResponse( + current: DirectoryData | null, + response: ParsedDirectoryContentsResponse, +): DirectoryData | null { + if (!current || current.data.directoryPath !== response.path) { + return current + } + + return { + ...current, + data: { + ...current.data, + nodes: response.nodes, + }, + } +} + +function isRecord(value: unknown): value is Record { + return typeof value === "object" && value !== null && !Array.isArray(value) +} diff --git a/src/App/index.tsx b/src/App/index.tsx index a3e3d0c..e0fa109 100644 --- a/src/App/index.tsx +++ b/src/App/index.tsx @@ -4,6 +4,18 @@ import Menu from "./Menu" import Modal from "./Modal" import LoadFile from "./LoadFile" import SaveFile from "./SaveFile" +import { + applyDirectoryContentsResponse, + createDirectoryContentsRequest, + parseDirectoryContentsResponse, + type DirectoryData, +} from "./directoryRequests" + +export type { + DirectoryData, + FileSystemNode, + NodeChildren, +} from "./directoryRequests" // NOTE: Change the PORT to the port of the server from the backend // The app's server is running on port 8000, so use a different port @@ -21,25 +33,6 @@ type EmbeddedViewer = { } } -export type DirectoryData = { - type: string - data: { - directoryPath: string | null - directoryName: string | null - nodes: NodeChildren - } -} - -export type FileSystemNode = { - name: string - path: string - children?: NodeChildren -} - -export type NodeChildren = { - [key: string]: FileSystemNode -} - function App(): JSX.Element { const [connected, setConnected] = useState(false) const [ngViewerURL, setNgViewerURL] = useState(null) @@ -199,65 +192,32 @@ function App(): JSX.Element { break } - const requestId = `loadfile-${++requestCounterRef.current}` + const { requestId, message } = + createDirectoryContentsRequest( + nextPath, + ++requestCounterRef.current, + ) activeRequestIdRef.current = requestId - - parent.postMessage( - { - type: "request-directory-contents", - data: { - path: nextPath, - recursive: true, - requestId, - }, - }, - "*" - ) + parent.postMessage(message, "*") break } case "send-directory-contents-response": { - // Late responses from a previous root arrive after we've moved - // on; drop them. requestId is nullable in the schema, so a - // missing id also fails to match. - if (result?.data?.requestId !== activeRequestIdRef.current) { - break - } + const response = parseDirectoryContentsResponse( + result, + activeRequestIdRef.current, + ) + if (!response) break - const responsePath: string = result.data.path - const responseNodes: NodeChildren = - result.data.nodes ?? {} - const errorCode: string | undefined = result.data.error?.code - - // denied / not-found / internal → treat as empty tree; the - // user's "no files" state is already the right rendering. - // limit → partial nodes present; render what we got. - // (The truncated flag could surface a hint later; keep the - // current diff focused on unblocking discovery.) - const nextNodes: NodeChildren = - errorCode === "denied" || - errorCode === "not-found" || - errorCode === "internal" - ? {} - : responseNodes - - if (errorCode === "internal") { + if (response.error?.code === "internal") { console.error( "request-directory-contents failed:", - result.data.error + response.error, ) } - setDirectoryData((prev) => { - if (!prev) return prev - if (prev.data.directoryPath !== responsePath) return prev - return { - ...prev, - data: { - ...prev.data, - nodes: nextNodes, - }, - } - }) + setDirectoryData((prev) => + applyDirectoryContentsResponse(prev, response), + ) break } case "send-neuroglancer-json": diff --git a/tests/directoryRequests.test.ts b/tests/directoryRequests.test.ts new file mode 100644 index 0000000..5c1f8d3 --- /dev/null +++ b/tests/directoryRequests.test.ts @@ -0,0 +1,113 @@ +import assert from "node:assert/strict" +import test from "node:test" + +import { + applyDirectoryContentsResponse, + createDirectoryContentsRequest, + parseDirectoryContentsResponse, + type DirectoryData, + type NodeChildren, +} from "../src/App/directoryRequests.ts" + +const initialDirectory: DirectoryData = { + type: "send-directory-contents", + data: { + directoryPath: "/data/current", + directoryName: "current", + nodes: {}, + }, +} + +const nodes: NodeChildren = { + "state.json": { + name: "state.json", + path: "/data/current/state.json", + }, +} + +function response( + requestId: string | null, + path = "/data/current", + error?: Record, + responseNodes: NodeChildren = nodes, +) { + return { + type: "send-directory-contents-response", + data: { requestId, path, nodes: responseNodes, error }, + } +} + +test("creates unique recursive directory requests", () => { + const first = createDirectoryContentsRequest("/data/first", 1) + const second = createDirectoryContentsRequest("/data/second", 2) + + assert.equal(first.requestId, "loadfile-1") + assert.equal(second.requestId, "loadfile-2") + assert.deepEqual(first.message.data, { + path: "/data/first", + recursive: true, + requestId: "loadfile-1", + }) +}) + +test("applies a matching recursive response", () => { + const parsed = parseDirectoryContentsResponse( + response("loadfile-2"), + "loadfile-2", + ) + assert.ok(parsed) + + const updated = applyDirectoryContentsResponse(initialDirectory, parsed) + assert.deepEqual(updated?.data.nodes, nodes) +}) + +test("ignores missing and stale responses after rapid root changes", () => { + assert.equal( + parseDirectoryContentsResponse(response("loadfile-1"), "loadfile-2"), + null, + ) + assert.equal( + parseDirectoryContentsResponse(response(null), "loadfile-2"), + null, + ) + assert.equal(parseDirectoryContentsResponse(response(null), null), null) +}) + +test("does not apply a response for a different directory path", () => { + const parsed = parseDirectoryContentsResponse( + response("loadfile-2", "/data/old"), + "loadfile-2", + ) + assert.ok(parsed) + assert.equal( + applyDirectoryContentsResponse(initialDirectory, parsed), + initialDirectory, + ) +}) + +for (const code of ["denied", "not-found", "internal"]) { + test(`${code} responses expose an empty tree`, () => { + const parsed = parseDirectoryContentsResponse( + response("loadfile-2", "/data/current", { + code, + message: `${code} response`, + }), + "loadfile-2", + ) + assert.ok(parsed) + assert.deepEqual(parsed.nodes, {}) + }) +} + +test("limit responses preserve partial results", () => { + const parsed = parseDirectoryContentsResponse( + response("loadfile-2", "/data/current", { + code: "limit", + message: "result limit reached", + truncated: true, + }), + "loadfile-2", + ) + assert.ok(parsed) + assert.deepEqual(parsed.nodes, nodes) +}) diff --git a/tsconfig.test.json b/tsconfig.test.json new file mode 100644 index 0000000..8951a65 --- /dev/null +++ b/tsconfig.test.json @@ -0,0 +1,9 @@ +{ + "extends": "./tsconfig.node.json", + "compilerOptions": { + "allowImportingTsExtensions": true, + "composite": false, + "types": ["node"] + }, + "include": ["tests/**/*.ts", "src/App/directoryRequests.ts"] +}