[CI] Bring back cibuildwheel - embedd java in container

Author: gnodar01

.github/workflows/wheel.yml

@@ -31,23 +31,30 @@ jobs:
 
           #- python_version: '3.8'
           #  python: 38
+          #  cibuildwheel: "cibuildwheel<3"
           - python_version: '3.9'
             python: 39
+            cibuildwheel: "cibuildwheel<3"
           #- python_version: '3.10'
           #  python: 310
+          #  cibuildwheel: "cibuildwheel<3"
           #- python_version: '3.11'
           #  python: 311
+          #  cibuildwheel: "cibuildwheel<4"
           #- python_version: '3.12'
           #  python: 312
+          #  cibuildwheel: "cibuildwheel<4"
           #- python_version: '3.13'
           #  python: 313
+          #  cibuildwheel: "cibuildwheel<4"
 
     runs-on: ${{ matrix.os }}
 
     steps:
     - uses: actions/checkout@v4
 
     - name: Setup Java JDK
+      if: ${{ matrix.os != 'ubuntu-latest' }}
       uses: actions/setup-java@v3
       with:
         distribution: "temurin"
@@ -68,16 +75,23 @@ jobs:
         pip install "numpy<2"
         pip install -e .
 
-    - name: Build Python package
-      run: python setup.py bdist_wheel
+    - name: Install cibuildwheel
+      run: python -m pip install "${{ matrix.cibuildwheel }}"
 
-    - name: Inspect
-      run: |
-          find dist/
+    - name: Build wheels
+      run: python -m cibuildwheel --output-dir wheelhouse
+      env:
+        CIBW_BUILD: cp${{ matrix.python }}-${{ matrix.platform_id }}
+        CIBW_ARCHS: all
+        CIBW_MANYLINUX_X86_64_IMAGE: ${{ matrix.manylinux_image }}
+        CIBW_MANYLINUX_I686_IMAGE: ${{ matrix.manylinux_image }}
+        CIBW_ENVIRONMENT: 'JAVA_HOME="${{ env.JAVA_HOME }}"'
+        CIBW_BEFORE_ALL_LINUX: |
+            yum install -y java-11-openjdk-devel
+            echo $JAVA_HOME
 
-    #- name: Upload a Build Artifact
-    #  uses: actions/upload-artifact@v4
-    #  with:
-    #    # Artifact name
-    #    name: prokaryote-2.4.4-py2.py3-none-any.whl
-    #    path: dist/
+    - name: Store artifacts
+      uses: actions/upload-artifact@v4
+      with:
+        name: cibw-wheels-cp${{ matrix.python }}-${{ matrix.platform_id }}
+        path: ./wheelhouse/*.whl