Update container and CRAN URLs in workflow

Author: LiNk-NY

.github/workflows/basic_checks.yml

@@ -18,20 +18,20 @@ env:
 jobs:
   r-build-and-check:
     runs-on: ubuntu-latest
-    container: bioconductor/bioconductor_docker:devel
+    container: ghcr.io/bioconductor/bioconductor_docker:devel
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: TRUE
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      CRAN: https://packagemanager.posit.co/cran/__linux__/noble/latest
+      CRAN: https://p3m.dev/cran/__linux__/noble/latest
 
     steps:
       - name: Checkout Repository
         uses: actions/checkout@v4
 
       - name: Query dependencies and update old packages
         run: |
-          BiocManager::install(ask=FALSE)
+          BiocManager::install("remotes", ask = FALSE)
           saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
         shell: Rscript {0}