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Log output file path when saving v1_merfish_cells
1 parent c458319 commit d90b979

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Lines changed: 2 additions & 1 deletion

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src/xenium_analysis_tools/map_xenium/map_sections.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -60,6 +60,7 @@ def get_v1_merfish_cells(abc_cache=None, output_path=None):
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).set_index('cell_label')
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v1_merfish_cells = merfish_ccf_metadata.loc[merfish_ccf_metadata['parcellation_structure']=='VISp']
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if output_path:
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print(f'Saving df to: {output_path}")
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v1_merfish_cells.to_csv(output_path)
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return v1_merfish_cells
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@@ -398,4 +399,4 @@ def map_single_section(section_path, logger, save_results_path,
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if not merged_to_table:
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logger.error(f"Merging mapping results failed for {section_name}")
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return False
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return True
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return True

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