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fixed indentation issue in divide_sections.py
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Lines changed: 7 additions & 7 deletions

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src/xenium_analysis_tools/process_xenium/divide_sections.py

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -93,13 +93,13 @@ def crop_filter_sdata(sdata, bbox, c_system='global', crop_transcripts_separatel
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# Ensure clean index after filtering
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filtered_transcripts = filtered_transcripts.reset_index(drop=True)
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cropped_sdata.points['transcripts'] = sd.models.PointsModel.parse(filtered_transcripts)
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else:
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cropped_sdata = sdata.query.bounding_box(
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axes=('y', 'x'),
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min_coordinate=[bbox['y_min'], bbox['x_min']],
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max_coordinate=[bbox['y_max'], bbox['x_max']],
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target_coordinate_system=c_system
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)
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else:
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cropped_sdata = sdata.query.bounding_box(
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axes=('y', 'x'),
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min_coordinate=[bbox['y_min'], bbox['x_min']],
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max_coordinate=[bbox['y_max'], bbox['x_max']],
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target_coordinate_system=c_system
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)
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return cropped_sdata
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def crop_dapi_image(dapi_image, bbox):

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