diff --git a/.release-please-manifest.json b/.release-please-manifest.json
index 32fe2b3..54acf11 100644
--- a/.release-please-manifest.json
+++ b/.release-please-manifest.json
@@ -1,3 +1,3 @@
 {
-  ".": "1.39.0"
+  ".": "1.39.1"
 }
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 993265f..8ade3c6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,12 @@
 # Changelog
 
+## [1.39.1](https://github.com/0xPlayerOne/code-foundry/compare/v1.39.0...v1.39.1) (2026-10-01)
+
+
+### Bug Fixes
+
+* report inactive main rulesets in github doctor ([#682](https://github.com/0xPlayerOne/code-foundry/issues/682)) ([695a0b4](https://github.com/0xPlayerOne/code-foundry/commit/695a0b437910aa8e664a481c1648dbadcc1a2de8))
+
 ## [1.39.0](https://github.com/0xPlayerOne/code-foundry/compare/v1.38.1...v1.39.0) (2026-10-01)
 
 
diff --git a/package.json b/package.json
index 4c41f88..8ae64bb 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "code-foundry",
-  "version": "1.39.0",
+  "version": "1.39.1",
   "description": "A fast, language-aware repository factory for agent-ready workflows, testing, security, and release automation.",
   "homepage": "https://github.com/0xPlayerOne/code-foundry#readme",
   "bugs": {